ncbi genome sequencing bioproject Search Results


genbank  (ATCC)
93
ATCC genbank
Genbank, supplied by ATCC, used in various techniques. Bioz Stars score: 93/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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genbank - by Bioz Stars, 2026-02
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ncbi bioproject database  (Biotechnology Information)
90
Biotechnology Information ncbi bioproject database
Ncbi Bioproject Database, supplied by Biotechnology Information, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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ncbi bioproject database prjna5732983  (Biotechnology Information)
90
Biotechnology Information ncbi bioproject database prjna5732983
( A ) SimPlot genetic similarity plot between SARS-CoV-2 Wuhan-Hu-1 and representative CoV sequences using a 400–base pair (bp) window at a 50-bp step and the Kimura two-parameter model. Phylogenetic trees of regions of disproportional similarities, showing high similarities between SARS-CoV-2 and ZXC21 ( B ) or GD/P1La ( C ), high genetic divergences of all Pan_SL-CoV sequences ( D ), and high similarities between GD/P1La and divergent Bat_SL-CoV sequences ( E ). All positions are relative to Wuhan-Hu-1. Red arrows indicate the discordant clustering relationship of SARS-CoV-2 or Pan_SL-CoV sequences with other CoV sequences. In (A), we use the ORF1a and ORF1b nomenclature consistent with the original publication from of the Wuhan virus ; however, the National Center for Biotechnology Information <t>(NCBI)</t> betacoronavirus reference sequences (see SAR-CoV-2 and NC_045512.2 for an example) designate a single longer stretch called ORF1ab (from 266 to 21,555) that spans both 1a and 1b.
Ncbi Bioproject Database Prjna5732983, supplied by Biotechnology Information, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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bioproject database  (Biotechnology Information)
90
Biotechnology Information bioproject database
Sequence alignment and phylogenetic analysis of VcMYB. (A) Heat map depicting the various MYBs, qRT-PCR analysis was also carried out for the genes in red. (B) Protein alignment of Vc MYB and its homologs in Arabidopsis, Vitis vinifera and Malus domestica , The sg6-motif in boxed. (C) Phylogenetic analysis of VcMYB and 138 other plants MYB protein sequences obtained from the <t>NCBI</t> database.VcMYB1 is denoted by the black spot. MYB of Arabidopsis (AtMYB0: At3g27920; AtMYB1: At3g09230; AtMYB10: At3g12820; AtMYB100: At2g25230; AtMYB101: At2g32460; AtMYB102: At4g21440; AtMYB103: At1g63910; AtMYB104: At2g26950; AtMYB105: At1g69560; AtMYB106: At3g01140; AtMYB107: At3g02940; AtMYB108: At3g06490; AtMYB109: At3g55730; AtMYB11: At3g62610;AtMYB110: At3g29020 AtMYB111: At5g49330; AtMYB112: At1g48000; AtMYB113: At1g66370; AtMYB114: At1g66380; AtMYB115: At5g40360; AtMYB116: At1g25340; AtMYB117: At1g26780; AtMYB118: At3g27780; AtMYB119: At5g58850; AtMYB12: At2g47460; AtMYB120: At5g55020; AtMYB121: At3g30210; AtMYB122: At1g74080; AtMYB123: At5g35550; AtMYB124: At1g14350; AtMYB125: At3g60460; AtMYB13: At1g06180; AtMYB14: At2g31180; AtMYB15: At3g23250; AtMYB16: At5g15310; AtMYB17:At3g61250; AtMYB18: At4g25560; AtMYB19: At5g52260; AtMYB2: At2g47190; AtMYB20: At1g66230; AtMYB21: At3g27810; AtMYB22: At5g40430; AtMYB23: At5g40330; AtMYB24: At5g40350; AtMYB25: At2g39880; AtMYB26: At3g13890; AtMYB27: At3g53200; AtMYB28: At5g61420; AtMYB29: At5g07690; AtMYB3: At1g22640; AtMYB30: At3g28910; AtMYB31: At1g74650; AtMYB32: At4g34990; AtMYB33: At5g06100; AtMYB34: At5g60890; AtMYB35: At3g28470; AtMYB36: At5g57620; AtMYB37: At5g23000; AtMYB38: At2g36890; AtMYB39: At4g17780; AtMYB4: At4g38620; AtMYB40: At5g14340; AtMYB41: At4g28110; AtMYB42: At4g12350; AtMYB43: At5g16600; AtMYB44: At5g67300; AtMYB45: At3g48920; AtMYB46: At5g12870; AtMYB47: At1g18710; AtMYB48: At3g46130; AtMYB49: At5g54230; AtMYB5: At3g13540; AtMYB50: At1g57560; AtMYB51: At1g18570; AtMYB52: At1g17950; AtMYB53: At5g65230; AtMYB54: At1g73410; AtMYB55: At4g01680; AtMYB56: At5g17800; AtMYB57: At3g01530; AtMYB58: At1g16490; AtMYB59: At5g59780; AtMYB6: At4g09460; AtMYB60: At1g08810; AtMYB61: At1g09540; AtMYB62: At1g68320; AtMYB63: At1g79180; AtMYB64: At5g11050; AtMYB65: At3g11440; AtMYB66: At5g14750; AtMYB67: At3g12720; AtMYB68: At5g65790; AtMYB69: At4g33450; AtMYB7: At2g16720; AtMYB70: At2g23290; AtMYB71: At3g24310; AtMYB72: At1g56160; AtMYB73: At4g37260; AtMYB74: At4g05100; AtMYB75: At1g56650; AtMYB76: At5g07700; AtMYB77: At3g50060; AtMYB78: At5g49620; AtMYB79: At4g13480; AtMYB8: At1g35515; AtMYB80: At5g56110; AtMYB81: At2g26960; AtMYB82: At5g52600; AtMYB83: At3g08500; AtMYB84: At3g49690; AtMYB85: At4g22680; AtMYB86: At5g26660; AtMYB87: At4g37780; AtMYB88: At2g02820; AtMYB89: At5g39700; AtMYB9: At5g16770; AtMYB90: At1g66390; AtMYB91: At2g37630; AtMYB92: At5g10280; AtMYB93: At1g34670; AtMYB94: At3g47600; AtMYB95: At1g74430;AtMYB96: At5g62470; AtMYB97: At4g26930; AtMYB98: At4g18770; AtMYB99: At5g62320; MdMYB10: M. domestica , ABB84753; LjTT2a: Lotus japonicas , BAG12893; PtMYB134: P. tremuloides , FJ573151; VvMYBPA2: Vitis vinifera , EU919682; BnTT2-1: Brassica napus , DQ778643; MdMYB1: Malus domestica, DQ886414.
Bioproject Database, supplied by Biotechnology Information, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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bioproject  (Biotechnology Information)
90
Biotechnology Information bioproject
Sequence alignment and phylogenetic analysis of VcMYB. (A) Heat map depicting the various MYBs, qRT-PCR analysis was also carried out for the genes in red. (B) Protein alignment of Vc MYB and its homologs in Arabidopsis, Vitis vinifera and Malus domestica , The sg6-motif in boxed. (C) Phylogenetic analysis of VcMYB and 138 other plants MYB protein sequences obtained from the <t>NCBI</t> database.VcMYB1 is denoted by the black spot. MYB of Arabidopsis (AtMYB0: At3g27920; AtMYB1: At3g09230; AtMYB10: At3g12820; AtMYB100: At2g25230; AtMYB101: At2g32460; AtMYB102: At4g21440; AtMYB103: At1g63910; AtMYB104: At2g26950; AtMYB105: At1g69560; AtMYB106: At3g01140; AtMYB107: At3g02940; AtMYB108: At3g06490; AtMYB109: At3g55730; AtMYB11: At3g62610;AtMYB110: At3g29020 AtMYB111: At5g49330; AtMYB112: At1g48000; AtMYB113: At1g66370; AtMYB114: At1g66380; AtMYB115: At5g40360; AtMYB116: At1g25340; AtMYB117: At1g26780; AtMYB118: At3g27780; AtMYB119: At5g58850; AtMYB12: At2g47460; AtMYB120: At5g55020; AtMYB121: At3g30210; AtMYB122: At1g74080; AtMYB123: At5g35550; AtMYB124: At1g14350; AtMYB125: At3g60460; AtMYB13: At1g06180; AtMYB14: At2g31180; AtMYB15: At3g23250; AtMYB16: At5g15310; AtMYB17:At3g61250; AtMYB18: At4g25560; AtMYB19: At5g52260; AtMYB2: At2g47190; AtMYB20: At1g66230; AtMYB21: At3g27810; AtMYB22: At5g40430; AtMYB23: At5g40330; AtMYB24: At5g40350; AtMYB25: At2g39880; AtMYB26: At3g13890; AtMYB27: At3g53200; AtMYB28: At5g61420; AtMYB29: At5g07690; AtMYB3: At1g22640; AtMYB30: At3g28910; AtMYB31: At1g74650; AtMYB32: At4g34990; AtMYB33: At5g06100; AtMYB34: At5g60890; AtMYB35: At3g28470; AtMYB36: At5g57620; AtMYB37: At5g23000; AtMYB38: At2g36890; AtMYB39: At4g17780; AtMYB4: At4g38620; AtMYB40: At5g14340; AtMYB41: At4g28110; AtMYB42: At4g12350; AtMYB43: At5g16600; AtMYB44: At5g67300; AtMYB45: At3g48920; AtMYB46: At5g12870; AtMYB47: At1g18710; AtMYB48: At3g46130; AtMYB49: At5g54230; AtMYB5: At3g13540; AtMYB50: At1g57560; AtMYB51: At1g18570; AtMYB52: At1g17950; AtMYB53: At5g65230; AtMYB54: At1g73410; AtMYB55: At4g01680; AtMYB56: At5g17800; AtMYB57: At3g01530; AtMYB58: At1g16490; AtMYB59: At5g59780; AtMYB6: At4g09460; AtMYB60: At1g08810; AtMYB61: At1g09540; AtMYB62: At1g68320; AtMYB63: At1g79180; AtMYB64: At5g11050; AtMYB65: At3g11440; AtMYB66: At5g14750; AtMYB67: At3g12720; AtMYB68: At5g65790; AtMYB69: At4g33450; AtMYB7: At2g16720; AtMYB70: At2g23290; AtMYB71: At3g24310; AtMYB72: At1g56160; AtMYB73: At4g37260; AtMYB74: At4g05100; AtMYB75: At1g56650; AtMYB76: At5g07700; AtMYB77: At3g50060; AtMYB78: At5g49620; AtMYB79: At4g13480; AtMYB8: At1g35515; AtMYB80: At5g56110; AtMYB81: At2g26960; AtMYB82: At5g52600; AtMYB83: At3g08500; AtMYB84: At3g49690; AtMYB85: At4g22680; AtMYB86: At5g26660; AtMYB87: At4g37780; AtMYB88: At2g02820; AtMYB89: At5g39700; AtMYB9: At5g16770; AtMYB90: At1g66390; AtMYB91: At2g37630; AtMYB92: At5g10280; AtMYB93: At1g34670; AtMYB94: At3g47600; AtMYB95: At1g74430;AtMYB96: At5g62470; AtMYB97: At4g26930; AtMYB98: At4g18770; AtMYB99: At5g62320; MdMYB10: M. domestica , ABB84753; LjTT2a: Lotus japonicas , BAG12893; PtMYB134: P. tremuloides , FJ573151; VvMYBPA2: Vitis vinifera , EU919682; BnTT2-1: Brassica napus , DQ778643; MdMYB1: Malus domestica, DQ886414.
Bioproject, supplied by Biotechnology Information, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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bioproject - by Bioz Stars, 2026-02
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sequence read archive  (Biotechnology Information)
90
Biotechnology Information sequence read archive
Sequence alignment and phylogenetic analysis of VcMYB. (A) Heat map depicting the various MYBs, qRT-PCR analysis was also carried out for the genes in red. (B) Protein alignment of Vc MYB and its homologs in Arabidopsis, Vitis vinifera and Malus domestica , The sg6-motif in boxed. (C) Phylogenetic analysis of VcMYB and 138 other plants MYB protein sequences obtained from the <t>NCBI</t> database.VcMYB1 is denoted by the black spot. MYB of Arabidopsis (AtMYB0: At3g27920; AtMYB1: At3g09230; AtMYB10: At3g12820; AtMYB100: At2g25230; AtMYB101: At2g32460; AtMYB102: At4g21440; AtMYB103: At1g63910; AtMYB104: At2g26950; AtMYB105: At1g69560; AtMYB106: At3g01140; AtMYB107: At3g02940; AtMYB108: At3g06490; AtMYB109: At3g55730; AtMYB11: At3g62610;AtMYB110: At3g29020 AtMYB111: At5g49330; AtMYB112: At1g48000; AtMYB113: At1g66370; AtMYB114: At1g66380; AtMYB115: At5g40360; AtMYB116: At1g25340; AtMYB117: At1g26780; AtMYB118: At3g27780; AtMYB119: At5g58850; AtMYB12: At2g47460; AtMYB120: At5g55020; AtMYB121: At3g30210; AtMYB122: At1g74080; AtMYB123: At5g35550; AtMYB124: At1g14350; AtMYB125: At3g60460; AtMYB13: At1g06180; AtMYB14: At2g31180; AtMYB15: At3g23250; AtMYB16: At5g15310; AtMYB17:At3g61250; AtMYB18: At4g25560; AtMYB19: At5g52260; AtMYB2: At2g47190; AtMYB20: At1g66230; AtMYB21: At3g27810; AtMYB22: At5g40430; AtMYB23: At5g40330; AtMYB24: At5g40350; AtMYB25: At2g39880; AtMYB26: At3g13890; AtMYB27: At3g53200; AtMYB28: At5g61420; AtMYB29: At5g07690; AtMYB3: At1g22640; AtMYB30: At3g28910; AtMYB31: At1g74650; AtMYB32: At4g34990; AtMYB33: At5g06100; AtMYB34: At5g60890; AtMYB35: At3g28470; AtMYB36: At5g57620; AtMYB37: At5g23000; AtMYB38: At2g36890; AtMYB39: At4g17780; AtMYB4: At4g38620; AtMYB40: At5g14340; AtMYB41: At4g28110; AtMYB42: At4g12350; AtMYB43: At5g16600; AtMYB44: At5g67300; AtMYB45: At3g48920; AtMYB46: At5g12870; AtMYB47: At1g18710; AtMYB48: At3g46130; AtMYB49: At5g54230; AtMYB5: At3g13540; AtMYB50: At1g57560; AtMYB51: At1g18570; AtMYB52: At1g17950; AtMYB53: At5g65230; AtMYB54: At1g73410; AtMYB55: At4g01680; AtMYB56: At5g17800; AtMYB57: At3g01530; AtMYB58: At1g16490; AtMYB59: At5g59780; AtMYB6: At4g09460; AtMYB60: At1g08810; AtMYB61: At1g09540; AtMYB62: At1g68320; AtMYB63: At1g79180; AtMYB64: At5g11050; AtMYB65: At3g11440; AtMYB66: At5g14750; AtMYB67: At3g12720; AtMYB68: At5g65790; AtMYB69: At4g33450; AtMYB7: At2g16720; AtMYB70: At2g23290; AtMYB71: At3g24310; AtMYB72: At1g56160; AtMYB73: At4g37260; AtMYB74: At4g05100; AtMYB75: At1g56650; AtMYB76: At5g07700; AtMYB77: At3g50060; AtMYB78: At5g49620; AtMYB79: At4g13480; AtMYB8: At1g35515; AtMYB80: At5g56110; AtMYB81: At2g26960; AtMYB82: At5g52600; AtMYB83: At3g08500; AtMYB84: At3g49690; AtMYB85: At4g22680; AtMYB86: At5g26660; AtMYB87: At4g37780; AtMYB88: At2g02820; AtMYB89: At5g39700; AtMYB9: At5g16770; AtMYB90: At1g66390; AtMYB91: At2g37630; AtMYB92: At5g10280; AtMYB93: At1g34670; AtMYB94: At3g47600; AtMYB95: At1g74430;AtMYB96: At5g62470; AtMYB97: At4g26930; AtMYB98: At4g18770; AtMYB99: At5g62320; MdMYB10: M. domestica , ABB84753; LjTT2a: Lotus japonicas , BAG12893; PtMYB134: P. tremuloides , FJ573151; VvMYBPA2: Vitis vinifera , EU919682; BnTT2-1: Brassica napus , DQ778643; MdMYB1: Malus domestica, DQ886414.
Sequence Read Archive, supplied by Biotechnology Information, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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sequence read archive - by Bioz Stars, 2026-02
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ncbi database  (Biotechnology Information)
90
Biotechnology Information ncbi database
Sequence alignment and phylogenetic analysis of VcMYB. (A) Heat map depicting the various MYBs, qRT-PCR analysis was also carried out for the genes in red. (B) Protein alignment of Vc MYB and its homologs in Arabidopsis, Vitis vinifera and Malus domestica , The sg6-motif in boxed. (C) Phylogenetic analysis of VcMYB and 138 other plants MYB protein sequences obtained from the <t>NCBI</t> database.VcMYB1 is denoted by the black spot. MYB of Arabidopsis (AtMYB0: At3g27920; AtMYB1: At3g09230; AtMYB10: At3g12820; AtMYB100: At2g25230; AtMYB101: At2g32460; AtMYB102: At4g21440; AtMYB103: At1g63910; AtMYB104: At2g26950; AtMYB105: At1g69560; AtMYB106: At3g01140; AtMYB107: At3g02940; AtMYB108: At3g06490; AtMYB109: At3g55730; AtMYB11: At3g62610;AtMYB110: At3g29020 AtMYB111: At5g49330; AtMYB112: At1g48000; AtMYB113: At1g66370; AtMYB114: At1g66380; AtMYB115: At5g40360; AtMYB116: At1g25340; AtMYB117: At1g26780; AtMYB118: At3g27780; AtMYB119: At5g58850; AtMYB12: At2g47460; AtMYB120: At5g55020; AtMYB121: At3g30210; AtMYB122: At1g74080; AtMYB123: At5g35550; AtMYB124: At1g14350; AtMYB125: At3g60460; AtMYB13: At1g06180; AtMYB14: At2g31180; AtMYB15: At3g23250; AtMYB16: At5g15310; AtMYB17:At3g61250; AtMYB18: At4g25560; AtMYB19: At5g52260; AtMYB2: At2g47190; AtMYB20: At1g66230; AtMYB21: At3g27810; AtMYB22: At5g40430; AtMYB23: At5g40330; AtMYB24: At5g40350; AtMYB25: At2g39880; AtMYB26: At3g13890; AtMYB27: At3g53200; AtMYB28: At5g61420; AtMYB29: At5g07690; AtMYB3: At1g22640; AtMYB30: At3g28910; AtMYB31: At1g74650; AtMYB32: At4g34990; AtMYB33: At5g06100; AtMYB34: At5g60890; AtMYB35: At3g28470; AtMYB36: At5g57620; AtMYB37: At5g23000; AtMYB38: At2g36890; AtMYB39: At4g17780; AtMYB4: At4g38620; AtMYB40: At5g14340; AtMYB41: At4g28110; AtMYB42: At4g12350; AtMYB43: At5g16600; AtMYB44: At5g67300; AtMYB45: At3g48920; AtMYB46: At5g12870; AtMYB47: At1g18710; AtMYB48: At3g46130; AtMYB49: At5g54230; AtMYB5: At3g13540; AtMYB50: At1g57560; AtMYB51: At1g18570; AtMYB52: At1g17950; AtMYB53: At5g65230; AtMYB54: At1g73410; AtMYB55: At4g01680; AtMYB56: At5g17800; AtMYB57: At3g01530; AtMYB58: At1g16490; AtMYB59: At5g59780; AtMYB6: At4g09460; AtMYB60: At1g08810; AtMYB61: At1g09540; AtMYB62: At1g68320; AtMYB63: At1g79180; AtMYB64: At5g11050; AtMYB65: At3g11440; AtMYB66: At5g14750; AtMYB67: At3g12720; AtMYB68: At5g65790; AtMYB69: At4g33450; AtMYB7: At2g16720; AtMYB70: At2g23290; AtMYB71: At3g24310; AtMYB72: At1g56160; AtMYB73: At4g37260; AtMYB74: At4g05100; AtMYB75: At1g56650; AtMYB76: At5g07700; AtMYB77: At3g50060; AtMYB78: At5g49620; AtMYB79: At4g13480; AtMYB8: At1g35515; AtMYB80: At5g56110; AtMYB81: At2g26960; AtMYB82: At5g52600; AtMYB83: At3g08500; AtMYB84: At3g49690; AtMYB85: At4g22680; AtMYB86: At5g26660; AtMYB87: At4g37780; AtMYB88: At2g02820; AtMYB89: At5g39700; AtMYB9: At5g16770; AtMYB90: At1g66390; AtMYB91: At2g37630; AtMYB92: At5g10280; AtMYB93: At1g34670; AtMYB94: At3g47600; AtMYB95: At1g74430;AtMYB96: At5g62470; AtMYB97: At4g26930; AtMYB98: At4g18770; AtMYB99: At5g62320; MdMYB10: M. domestica , ABB84753; LjTT2a: Lotus japonicas , BAG12893; PtMYB134: P. tremuloides , FJ573151; VvMYBPA2: Vitis vinifera , EU919682; BnTT2-1: Brassica napus , DQ778643; MdMYB1: Malus domestica, DQ886414.
Ncbi Database, supplied by Biotechnology Information, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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Average 90 stars, based on 1 article reviews
ncbi database - by Bioz Stars, 2026-02
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scaffold-level genome assemblies for poecilia individuals  (Pacific Biosciences)
90
Pacific Biosciences scaffold-level genome assemblies for poecilia individuals
Sequence alignment and phylogenetic analysis of VcMYB. (A) Heat map depicting the various MYBs, qRT-PCR analysis was also carried out for the genes in red. (B) Protein alignment of Vc MYB and its homologs in Arabidopsis, Vitis vinifera and Malus domestica , The sg6-motif in boxed. (C) Phylogenetic analysis of VcMYB and 138 other plants MYB protein sequences obtained from the <t>NCBI</t> database.VcMYB1 is denoted by the black spot. MYB of Arabidopsis (AtMYB0: At3g27920; AtMYB1: At3g09230; AtMYB10: At3g12820; AtMYB100: At2g25230; AtMYB101: At2g32460; AtMYB102: At4g21440; AtMYB103: At1g63910; AtMYB104: At2g26950; AtMYB105: At1g69560; AtMYB106: At3g01140; AtMYB107: At3g02940; AtMYB108: At3g06490; AtMYB109: At3g55730; AtMYB11: At3g62610;AtMYB110: At3g29020 AtMYB111: At5g49330; AtMYB112: At1g48000; AtMYB113: At1g66370; AtMYB114: At1g66380; AtMYB115: At5g40360; AtMYB116: At1g25340; AtMYB117: At1g26780; AtMYB118: At3g27780; AtMYB119: At5g58850; AtMYB12: At2g47460; AtMYB120: At5g55020; AtMYB121: At3g30210; AtMYB122: At1g74080; AtMYB123: At5g35550; AtMYB124: At1g14350; AtMYB125: At3g60460; AtMYB13: At1g06180; AtMYB14: At2g31180; AtMYB15: At3g23250; AtMYB16: At5g15310; AtMYB17:At3g61250; AtMYB18: At4g25560; AtMYB19: At5g52260; AtMYB2: At2g47190; AtMYB20: At1g66230; AtMYB21: At3g27810; AtMYB22: At5g40430; AtMYB23: At5g40330; AtMYB24: At5g40350; AtMYB25: At2g39880; AtMYB26: At3g13890; AtMYB27: At3g53200; AtMYB28: At5g61420; AtMYB29: At5g07690; AtMYB3: At1g22640; AtMYB30: At3g28910; AtMYB31: At1g74650; AtMYB32: At4g34990; AtMYB33: At5g06100; AtMYB34: At5g60890; AtMYB35: At3g28470; AtMYB36: At5g57620; AtMYB37: At5g23000; AtMYB38: At2g36890; AtMYB39: At4g17780; AtMYB4: At4g38620; AtMYB40: At5g14340; AtMYB41: At4g28110; AtMYB42: At4g12350; AtMYB43: At5g16600; AtMYB44: At5g67300; AtMYB45: At3g48920; AtMYB46: At5g12870; AtMYB47: At1g18710; AtMYB48: At3g46130; AtMYB49: At5g54230; AtMYB5: At3g13540; AtMYB50: At1g57560; AtMYB51: At1g18570; AtMYB52: At1g17950; AtMYB53: At5g65230; AtMYB54: At1g73410; AtMYB55: At4g01680; AtMYB56: At5g17800; AtMYB57: At3g01530; AtMYB58: At1g16490; AtMYB59: At5g59780; AtMYB6: At4g09460; AtMYB60: At1g08810; AtMYB61: At1g09540; AtMYB62: At1g68320; AtMYB63: At1g79180; AtMYB64: At5g11050; AtMYB65: At3g11440; AtMYB66: At5g14750; AtMYB67: At3g12720; AtMYB68: At5g65790; AtMYB69: At4g33450; AtMYB7: At2g16720; AtMYB70: At2g23290; AtMYB71: At3g24310; AtMYB72: At1g56160; AtMYB73: At4g37260; AtMYB74: At4g05100; AtMYB75: At1g56650; AtMYB76: At5g07700; AtMYB77: At3g50060; AtMYB78: At5g49620; AtMYB79: At4g13480; AtMYB8: At1g35515; AtMYB80: At5g56110; AtMYB81: At2g26960; AtMYB82: At5g52600; AtMYB83: At3g08500; AtMYB84: At3g49690; AtMYB85: At4g22680; AtMYB86: At5g26660; AtMYB87: At4g37780; AtMYB88: At2g02820; AtMYB89: At5g39700; AtMYB9: At5g16770; AtMYB90: At1g66390; AtMYB91: At2g37630; AtMYB92: At5g10280; AtMYB93: At1g34670; AtMYB94: At3g47600; AtMYB95: At1g74430;AtMYB96: At5g62470; AtMYB97: At4g26930; AtMYB98: At4g18770; AtMYB99: At5g62320; MdMYB10: M. domestica , ABB84753; LjTT2a: Lotus japonicas , BAG12893; PtMYB134: P. tremuloides , FJ573151; VvMYBPA2: Vitis vinifera , EU919682; BnTT2-1: Brassica napus , DQ778643; MdMYB1: Malus domestica, DQ886414.
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Sequence alignment and phylogenetic analysis of VcMYB. (A) Heat map depicting the various MYBs, qRT-PCR analysis was also carried out for the genes in red. (B) Protein alignment of Vc MYB and its homologs in Arabidopsis, Vitis vinifera and Malus domestica , The sg6-motif in boxed. (C) Phylogenetic analysis of VcMYB and 138 other plants MYB protein sequences obtained from the <t>NCBI</t> database.VcMYB1 is denoted by the black spot. MYB of Arabidopsis (AtMYB0: At3g27920; AtMYB1: At3g09230; AtMYB10: At3g12820; AtMYB100: At2g25230; AtMYB101: At2g32460; AtMYB102: At4g21440; AtMYB103: At1g63910; AtMYB104: At2g26950; AtMYB105: At1g69560; AtMYB106: At3g01140; AtMYB107: At3g02940; AtMYB108: At3g06490; AtMYB109: At3g55730; AtMYB11: At3g62610;AtMYB110: At3g29020 AtMYB111: At5g49330; AtMYB112: At1g48000; AtMYB113: At1g66370; AtMYB114: At1g66380; AtMYB115: At5g40360; AtMYB116: At1g25340; AtMYB117: At1g26780; AtMYB118: At3g27780; AtMYB119: At5g58850; AtMYB12: At2g47460; AtMYB120: At5g55020; AtMYB121: At3g30210; AtMYB122: At1g74080; AtMYB123: At5g35550; AtMYB124: At1g14350; AtMYB125: At3g60460; AtMYB13: At1g06180; AtMYB14: At2g31180; AtMYB15: At3g23250; AtMYB16: At5g15310; AtMYB17:At3g61250; AtMYB18: At4g25560; AtMYB19: At5g52260; AtMYB2: At2g47190; AtMYB20: At1g66230; AtMYB21: At3g27810; AtMYB22: At5g40430; AtMYB23: At5g40330; AtMYB24: At5g40350; AtMYB25: At2g39880; AtMYB26: At3g13890; AtMYB27: At3g53200; AtMYB28: At5g61420; AtMYB29: At5g07690; AtMYB3: At1g22640; AtMYB30: At3g28910; AtMYB31: At1g74650; AtMYB32: At4g34990; AtMYB33: At5g06100; AtMYB34: At5g60890; AtMYB35: At3g28470; AtMYB36: At5g57620; AtMYB37: At5g23000; AtMYB38: At2g36890; AtMYB39: At4g17780; AtMYB4: At4g38620; AtMYB40: At5g14340; AtMYB41: At4g28110; AtMYB42: At4g12350; AtMYB43: At5g16600; AtMYB44: At5g67300; AtMYB45: At3g48920; AtMYB46: At5g12870; AtMYB47: At1g18710; AtMYB48: At3g46130; AtMYB49: At5g54230; AtMYB5: At3g13540; AtMYB50: At1g57560; AtMYB51: At1g18570; AtMYB52: At1g17950; AtMYB53: At5g65230; AtMYB54: At1g73410; AtMYB55: At4g01680; AtMYB56: At5g17800; AtMYB57: At3g01530; AtMYB58: At1g16490; AtMYB59: At5g59780; AtMYB6: At4g09460; AtMYB60: At1g08810; AtMYB61: At1g09540; AtMYB62: At1g68320; AtMYB63: At1g79180; AtMYB64: At5g11050; AtMYB65: At3g11440; AtMYB66: At5g14750; AtMYB67: At3g12720; AtMYB68: At5g65790; AtMYB69: At4g33450; AtMYB7: At2g16720; AtMYB70: At2g23290; AtMYB71: At3g24310; AtMYB72: At1g56160; AtMYB73: At4g37260; AtMYB74: At4g05100; AtMYB75: At1g56650; AtMYB76: At5g07700; AtMYB77: At3g50060; AtMYB78: At5g49620; AtMYB79: At4g13480; AtMYB8: At1g35515; AtMYB80: At5g56110; AtMYB81: At2g26960; AtMYB82: At5g52600; AtMYB83: At3g08500; AtMYB84: At3g49690; AtMYB85: At4g22680; AtMYB86: At5g26660; AtMYB87: At4g37780; AtMYB88: At2g02820; AtMYB89: At5g39700; AtMYB9: At5g16770; AtMYB90: At1g66390; AtMYB91: At2g37630; AtMYB92: At5g10280; AtMYB93: At1g34670; AtMYB94: At3g47600; AtMYB95: At1g74430;AtMYB96: At5g62470; AtMYB97: At4g26930; AtMYB98: At4g18770; AtMYB99: At5g62320; MdMYB10: M. domestica , ABB84753; LjTT2a: Lotus japonicas , BAG12893; PtMYB134: P. tremuloides , FJ573151; VvMYBPA2: Vitis vinifera , EU919682; BnTT2-1: Brassica napus , DQ778643; MdMYB1: Malus domestica, DQ886414.
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sequence read archive database  (Biotechnology Information)
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Image Search Results


( A ) SimPlot genetic similarity plot between SARS-CoV-2 Wuhan-Hu-1 and representative CoV sequences using a 400–base pair (bp) window at a 50-bp step and the Kimura two-parameter model. Phylogenetic trees of regions of disproportional similarities, showing high similarities between SARS-CoV-2 and ZXC21 ( B ) or GD/P1La ( C ), high genetic divergences of all Pan_SL-CoV sequences ( D ), and high similarities between GD/P1La and divergent Bat_SL-CoV sequences ( E ). All positions are relative to Wuhan-Hu-1. Red arrows indicate the discordant clustering relationship of SARS-CoV-2 or Pan_SL-CoV sequences with other CoV sequences. In (A), we use the ORF1a and ORF1b nomenclature consistent with the original publication from of the Wuhan virus ; however, the National Center for Biotechnology Information (NCBI) betacoronavirus reference sequences (see SAR-CoV-2 and NC_045512.2 for an example) designate a single longer stretch called ORF1ab (from 266 to 21,555) that spans both 1a and 1b.

Journal: Science Advances

Article Title: Emergence of SARS-CoV-2 through recombination and strong purifying selection

doi: 10.1126/sciadv.abb9153

Figure Lengend Snippet: ( A ) SimPlot genetic similarity plot between SARS-CoV-2 Wuhan-Hu-1 and representative CoV sequences using a 400–base pair (bp) window at a 50-bp step and the Kimura two-parameter model. Phylogenetic trees of regions of disproportional similarities, showing high similarities between SARS-CoV-2 and ZXC21 ( B ) or GD/P1La ( C ), high genetic divergences of all Pan_SL-CoV sequences ( D ), and high similarities between GD/P1La and divergent Bat_SL-CoV sequences ( E ). All positions are relative to Wuhan-Hu-1. Red arrows indicate the discordant clustering relationship of SARS-CoV-2 or Pan_SL-CoV sequences with other CoV sequences. In (A), we use the ORF1a and ORF1b nomenclature consistent with the original publication from of the Wuhan virus ; however, the National Center for Biotechnology Information (NCBI) betacoronavirus reference sequences (see SAR-CoV-2 and NC_045512.2 for an example) designate a single longer stretch called ORF1ab (from 266 to 21,555) that spans both 1a and 1b.

Article Snippet: Pan_SL-CoV_GD/P1La sequence was generated by combining Pan_SL-CoV_GD/P1L ( ) with some additional sequences from the National Center for Biotechnology Information (NCBI) BioProject database PRJNA5732983 ( , ) to have a maximal coverage of the complete genome sequence for analysis.

Techniques: Virus

Sequence alignment and phylogenetic analysis of VcMYB. (A) Heat map depicting the various MYBs, qRT-PCR analysis was also carried out for the genes in red. (B) Protein alignment of Vc MYB and its homologs in Arabidopsis, Vitis vinifera and Malus domestica , The sg6-motif in boxed. (C) Phylogenetic analysis of VcMYB and 138 other plants MYB protein sequences obtained from the NCBI database.VcMYB1 is denoted by the black spot. MYB of Arabidopsis (AtMYB0: At3g27920; AtMYB1: At3g09230; AtMYB10: At3g12820; AtMYB100: At2g25230; AtMYB101: At2g32460; AtMYB102: At4g21440; AtMYB103: At1g63910; AtMYB104: At2g26950; AtMYB105: At1g69560; AtMYB106: At3g01140; AtMYB107: At3g02940; AtMYB108: At3g06490; AtMYB109: At3g55730; AtMYB11: At3g62610;AtMYB110: At3g29020 AtMYB111: At5g49330; AtMYB112: At1g48000; AtMYB113: At1g66370; AtMYB114: At1g66380; AtMYB115: At5g40360; AtMYB116: At1g25340; AtMYB117: At1g26780; AtMYB118: At3g27780; AtMYB119: At5g58850; AtMYB12: At2g47460; AtMYB120: At5g55020; AtMYB121: At3g30210; AtMYB122: At1g74080; AtMYB123: At5g35550; AtMYB124: At1g14350; AtMYB125: At3g60460; AtMYB13: At1g06180; AtMYB14: At2g31180; AtMYB15: At3g23250; AtMYB16: At5g15310; AtMYB17:At3g61250; AtMYB18: At4g25560; AtMYB19: At5g52260; AtMYB2: At2g47190; AtMYB20: At1g66230; AtMYB21: At3g27810; AtMYB22: At5g40430; AtMYB23: At5g40330; AtMYB24: At5g40350; AtMYB25: At2g39880; AtMYB26: At3g13890; AtMYB27: At3g53200; AtMYB28: At5g61420; AtMYB29: At5g07690; AtMYB3: At1g22640; AtMYB30: At3g28910; AtMYB31: At1g74650; AtMYB32: At4g34990; AtMYB33: At5g06100; AtMYB34: At5g60890; AtMYB35: At3g28470; AtMYB36: At5g57620; AtMYB37: At5g23000; AtMYB38: At2g36890; AtMYB39: At4g17780; AtMYB4: At4g38620; AtMYB40: At5g14340; AtMYB41: At4g28110; AtMYB42: At4g12350; AtMYB43: At5g16600; AtMYB44: At5g67300; AtMYB45: At3g48920; AtMYB46: At5g12870; AtMYB47: At1g18710; AtMYB48: At3g46130; AtMYB49: At5g54230; AtMYB5: At3g13540; AtMYB50: At1g57560; AtMYB51: At1g18570; AtMYB52: At1g17950; AtMYB53: At5g65230; AtMYB54: At1g73410; AtMYB55: At4g01680; AtMYB56: At5g17800; AtMYB57: At3g01530; AtMYB58: At1g16490; AtMYB59: At5g59780; AtMYB6: At4g09460; AtMYB60: At1g08810; AtMYB61: At1g09540; AtMYB62: At1g68320; AtMYB63: At1g79180; AtMYB64: At5g11050; AtMYB65: At3g11440; AtMYB66: At5g14750; AtMYB67: At3g12720; AtMYB68: At5g65790; AtMYB69: At4g33450; AtMYB7: At2g16720; AtMYB70: At2g23290; AtMYB71: At3g24310; AtMYB72: At1g56160; AtMYB73: At4g37260; AtMYB74: At4g05100; AtMYB75: At1g56650; AtMYB76: At5g07700; AtMYB77: At3g50060; AtMYB78: At5g49620; AtMYB79: At4g13480; AtMYB8: At1g35515; AtMYB80: At5g56110; AtMYB81: At2g26960; AtMYB82: At5g52600; AtMYB83: At3g08500; AtMYB84: At3g49690; AtMYB85: At4g22680; AtMYB86: At5g26660; AtMYB87: At4g37780; AtMYB88: At2g02820; AtMYB89: At5g39700; AtMYB9: At5g16770; AtMYB90: At1g66390; AtMYB91: At2g37630; AtMYB92: At5g10280; AtMYB93: At1g34670; AtMYB94: At3g47600; AtMYB95: At1g74430;AtMYB96: At5g62470; AtMYB97: At4g26930; AtMYB98: At4g18770; AtMYB99: At5g62320; MdMYB10: M. domestica , ABB84753; LjTT2a: Lotus japonicas , BAG12893; PtMYB134: P. tremuloides , FJ573151; VvMYBPA2: Vitis vinifera , EU919682; BnTT2-1: Brassica napus , DQ778643; MdMYB1: Malus domestica, DQ886414.

Journal: Frontiers in Plant Science

Article Title: Single-Molecule Real-Time and Illumina Sequencing to Analyze Transcriptional Regulation of Flavonoid Synthesis in Blueberry

doi: 10.3389/fpls.2021.754325

Figure Lengend Snippet: Sequence alignment and phylogenetic analysis of VcMYB. (A) Heat map depicting the various MYBs, qRT-PCR analysis was also carried out for the genes in red. (B) Protein alignment of Vc MYB and its homologs in Arabidopsis, Vitis vinifera and Malus domestica , The sg6-motif in boxed. (C) Phylogenetic analysis of VcMYB and 138 other plants MYB protein sequences obtained from the NCBI database.VcMYB1 is denoted by the black spot. MYB of Arabidopsis (AtMYB0: At3g27920; AtMYB1: At3g09230; AtMYB10: At3g12820; AtMYB100: At2g25230; AtMYB101: At2g32460; AtMYB102: At4g21440; AtMYB103: At1g63910; AtMYB104: At2g26950; AtMYB105: At1g69560; AtMYB106: At3g01140; AtMYB107: At3g02940; AtMYB108: At3g06490; AtMYB109: At3g55730; AtMYB11: At3g62610;AtMYB110: At3g29020 AtMYB111: At5g49330; AtMYB112: At1g48000; AtMYB113: At1g66370; AtMYB114: At1g66380; AtMYB115: At5g40360; AtMYB116: At1g25340; AtMYB117: At1g26780; AtMYB118: At3g27780; AtMYB119: At5g58850; AtMYB12: At2g47460; AtMYB120: At5g55020; AtMYB121: At3g30210; AtMYB122: At1g74080; AtMYB123: At5g35550; AtMYB124: At1g14350; AtMYB125: At3g60460; AtMYB13: At1g06180; AtMYB14: At2g31180; AtMYB15: At3g23250; AtMYB16: At5g15310; AtMYB17:At3g61250; AtMYB18: At4g25560; AtMYB19: At5g52260; AtMYB2: At2g47190; AtMYB20: At1g66230; AtMYB21: At3g27810; AtMYB22: At5g40430; AtMYB23: At5g40330; AtMYB24: At5g40350; AtMYB25: At2g39880; AtMYB26: At3g13890; AtMYB27: At3g53200; AtMYB28: At5g61420; AtMYB29: At5g07690; AtMYB3: At1g22640; AtMYB30: At3g28910; AtMYB31: At1g74650; AtMYB32: At4g34990; AtMYB33: At5g06100; AtMYB34: At5g60890; AtMYB35: At3g28470; AtMYB36: At5g57620; AtMYB37: At5g23000; AtMYB38: At2g36890; AtMYB39: At4g17780; AtMYB4: At4g38620; AtMYB40: At5g14340; AtMYB41: At4g28110; AtMYB42: At4g12350; AtMYB43: At5g16600; AtMYB44: At5g67300; AtMYB45: At3g48920; AtMYB46: At5g12870; AtMYB47: At1g18710; AtMYB48: At3g46130; AtMYB49: At5g54230; AtMYB5: At3g13540; AtMYB50: At1g57560; AtMYB51: At1g18570; AtMYB52: At1g17950; AtMYB53: At5g65230; AtMYB54: At1g73410; AtMYB55: At4g01680; AtMYB56: At5g17800; AtMYB57: At3g01530; AtMYB58: At1g16490; AtMYB59: At5g59780; AtMYB6: At4g09460; AtMYB60: At1g08810; AtMYB61: At1g09540; AtMYB62: At1g68320; AtMYB63: At1g79180; AtMYB64: At5g11050; AtMYB65: At3g11440; AtMYB66: At5g14750; AtMYB67: At3g12720; AtMYB68: At5g65790; AtMYB69: At4g33450; AtMYB7: At2g16720; AtMYB70: At2g23290; AtMYB71: At3g24310; AtMYB72: At1g56160; AtMYB73: At4g37260; AtMYB74: At4g05100; AtMYB75: At1g56650; AtMYB76: At5g07700; AtMYB77: At3g50060; AtMYB78: At5g49620; AtMYB79: At4g13480; AtMYB8: At1g35515; AtMYB80: At5g56110; AtMYB81: At2g26960; AtMYB82: At5g52600; AtMYB83: At3g08500; AtMYB84: At3g49690; AtMYB85: At4g22680; AtMYB86: At5g26660; AtMYB87: At4g37780; AtMYB88: At2g02820; AtMYB89: At5g39700; AtMYB9: At5g16770; AtMYB90: At1g66390; AtMYB91: At2g37630; AtMYB92: At5g10280; AtMYB93: At1g34670; AtMYB94: At3g47600; AtMYB95: At1g74430;AtMYB96: At5g62470; AtMYB97: At4g26930; AtMYB98: At4g18770; AtMYB99: At5g62320; MdMYB10: M. domestica , ABB84753; LjTT2a: Lotus japonicas , BAG12893; PtMYB134: P. tremuloides , FJ573151; VvMYBPA2: Vitis vinifera , EU919682; BnTT2-1: Brassica napus , DQ778643; MdMYB1: Malus domestica, DQ886414.

Article Snippet: These data can be found here: National Center for Biotechnology Information (NCBI) BioProject database under BioProject ID: PRJNA757138 .

Techniques: Sequencing, Quantitative RT-PCR

Journal: iScience

Article Title: Identification of two miRNAs regulating cardiomyocyte proliferation in an Antarctic icefish

doi: 10.1016/j.isci.2024.110128

Figure Lengend Snippet:

Article Snippet: • All sequencing data associated with this project were deposited in the National Center for Biotechnology Information (NCBI) Sequence Read Archive database (BioProject Accession Number: PRJNA1069298).

Techniques: Isolation, Transfection, In Vitro, Sequencing, Software